Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUN

Cell type

Cell type Class
Gonad
Cell type
BIN-67
NA
NA

Attributes by original data submitter

Sample

source_name
Bin67 Ovarian Cancer Cell Line
cell line
Bin67
transfected vector
BRG1
antibody
c-Jun

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Samples were processed for CUT&RUN following protocol from https://dx.doi.org/10.17504/protocols.io.zcpf2vn . Antibodies were used at 1:25 dilution . Libraries were construct using Kapa Hyperprep DNA kit and Kapa dual index adapters per manufacturers instructions.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
40441448
Reads aligned (%)
83.8
Duplicates removed (%)
9.0
Number of peaks
3599 (qval < 1E-05)

hg19

Number of total reads
40441448
Reads aligned (%)
82.9
Duplicates removed (%)
9.5
Number of peaks
3291 (qval < 1E-05)

Base call quality data from DBCLS SRA